Resolution: 5.0 Å
EM Method: Single-particle
Fitted PDBs: 8f2i
Q-score: 0.003
Solares MJ, Jonaid GM, Luqiu WY, Berry S, Khadela J, Liang Y, Evans MC, Pridham KJ, Dearnaley WJ, Sheng Z, Kelly DF
Chembiochem (2022) 23 pp. e202200310-e202200310 [ Pubmed: 35789183 DOI: doi:10.1002/cbic.202200310 ]
- Cellular tumor antigen p53 (43 kDa, Protein from Homo sapiens)
- P53 monomer isolated from u87-mg cells (Cell from Homo sapiens)
Dimeric form of SARS-CoV-2 RNA-dependent RNA polymerase
Resolution: 5.5 Å
EM Method: Single-particle
Fitted PDBs: 7oyg
Q-score: 0.151
Jochheim FA, Tegunov D, Hillen HS, Schmitzova J, Kokic G, Dienemann C, Cramer P
Communications Biology (2021) 4 pp. 999- [ DOI: doi:10.1038/s42003-021-02529-9 ]
- Sars-cov-2 nsp8 (22 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Zinc ion (65 Da, Ligand)
- Rna (5'-r(p*up*gp*cp*ap*cp*up*gp*cp*gp*up*ap*g)-3') (18 kDa, RNA from Severe acute respiratory syndrome coronavirus 2)
- Rna (5'-r(p*cp*up*ap*cp*gp*cp*ap*gp*up*g)-3') (4 kDa, RNA from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 nsp7 (9 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Dimeric form of sars-cov-2 rna-dependent rna polymerase complex (nsp12, nsp7, nsp8) (Complex from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 rna-dependent rna polymerase (nsp12) (107 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
cryo-EM structure of a pre-catalytic group II intron RNP
Resolution: 5.0 Å
EM Method: Single-particle
Fitted PDBs: 7d0f
Q-score: 0.235
Liu N, Dong X, Hu C, Zeng J, Wang J, Wang J, Wang HW, Belfort M
Nucleic Acids Res (2020) 48 pp. 11185-11198 [ Pubmed: 33021674 DOI: doi:10.1093/nar/gkaa773 ]
- Group ii intron-encoded protein ltra (70 kDa, Protein from Lactococcus lactis subsp. cremoris)
- Ltra (Complex from Lactococcus lactis subsp. cremoris)
- A group ii intron --ltrb complex with its reverse transcriptase (Complex)
- Rna (738-mer) (295 kDa, RNA from Lactococcus lactis subsp. cremoris)
- Group ii intron-ltrb rna (Complex from Lactococcus lactis subsp. cremoris)
Cryo-EM structure of a pre-catalytic group II intron
Resolution: 5.0 Å
EM Method: Single-particle
Fitted PDBs: 7d0g
Q-score: 0.24
Liu N, Dong X, Hu C, Zeng J, Wang J, Wang J, Wang HW, Belfort M
Nucleic Acids Res (2020) 48 pp. 11185-11198 [ Pubmed: 33021674 DOI: doi:10.1093/nar/gkaa773 ]
- Group ii intron-encoded protein ltra (70 kDa, Protein from Lactococcus lactis subsp. cremoris)
- Ltrb (Complex from Lactococcus lactis subsp. cremoris)
- Rna (714-mer) (295 kDa, RNA from Lactococcus lactis subsp. cremoris)
- Rna (Complex from Lactococcus lactis subsp. cremoris)
- A group ii intron -- ltrb complex with its reverse transcriptase (Complex)
Resolution: 5.8 Å
EM Method: Single-particle
Fitted PDBs: 6s2f
Q-score: 0.173
Stokes K, Winczura A, Song B, Piccoli G, Grabarczyk DB
Nucleic Acids Res (2020) 48 pp. 8128-8145 [ Pubmed: 32585006 DOI: doi:10.1093/nar/gkaa541 ]
- Chromosome transmission fidelity protein 8 (15 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Complex of the catalytic domain of dna polymerase epsilon with the ctf18-1-8 module of ctf18-rfc (200 kDa, Complex from Saccharomyces cerevisiae S288C)
- Chromosome transmission fidelity protein 18 (3 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Sister chromatid cohesion protein dcc1 (44 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna polymerase epsilon catalytic subunit a (140 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Iron/sulfur cluster (351 Da, Ligand)
In situ structure of rotavirus VP1 RNA-dependent RNA polymerase (TLP_RNA)
Resolution: 5.2 Å
EM Method: Single-particle
Fitted PDBs: 6oj5
Q-score: 0.076
Jenni S, Salgado EN, Herrmann T, Li Z, Grant T, Grigorieff N, Trapani S, Estrozi LF, Harrison SC
J Mol Biol (2019) 431 pp. 3124-3138 [ DOI: doi:10.1016/j.jmb.2019.06.016 Pubmed: 31233764 ]
- Rotavirus a (strain rva/monkey/united states/rrv/1975/g3p5b[3]) (Virus from Rotavirus A (strain RVA/Monkey/United States/RRV/1975/G3P5B[3]))
- Rna-directed rna polymerase (125 kDa, Protein from Rotavirus A (strain RVA/Monkey/United States/RRV/1975/G3P5B[3]))
- Inner capsid protein vp2 (103 kDa, Protein from Rotavirus A (strain RVA/Monkey/United States/RRV/1975/G3P5B[3]))